Cannot edit files without bypassing sandbox

What version of Codex CLI is running?

codex-cli 0.120.0

What subscription do you have?

Business

Which model were you using?

gpt-5.4

What platform is your computer?

Linux 6.17.0-20-generic x86_64 x86_64

What terminal emulator and version are you using (if applicable)?

Kitty + ZelliJ

What issue are you seeing?

• Retrying the smallest possible repo-local patch. If the fallback prompt appears again, deny it and let the
  edit
    continue.

  • Edited src/window.vala (+4 -0)
      35
      36 +    private static bool verbose_enabled () {
      37 +        return FolioRuntime.verbose;
      38 +    }
      39 +
      40      construct {

  •
    Would you like to make the following edits?

  › Reason: command failed; retry without sandbox?

When questioned:

 The edit already succeeded.

  What you’re seeing is the tool runner offering an incorrect fallback after a successful apply_patch. The relevant
  part is:

  - Edited src/window.vala (+4 -0)

  That means the patch landed in src/window.vala.

But actually:

➜  vala/folio (main) git status
On branch main
Your branch is up-to-date with 'origin/main'.

nothing to commit, working tree clean

What steps can reproduce the bug?

Uploaded thread: 019d90bc-8701-7ca3-87c9-0c9ebfcec096

What is the expected behavior?

Make edits without bypassing sandbox

Additional information

No longer running this under jai, it's possible something leftover from it could be interfering

$USER/.codex$ rg jai -l              
history.jsonl
sessions/2026/04/09/rollout-2026-04-09T13-28-01-019d7236-b848-74a1-b7b1-c46adb910e5e.jsonl
sessions/2026/04/15/rollout-2026-04-15T11-42-47-019d90bc-8701-7ca3-87c9-0c9ebfcec096.jsonl
sessions/2026/04/09/rollout-2026-04-09T13-59-55-019d7253-eb6a-7c91-b4ab-bdcfc6ee16ba.jsonl
sessions/2026/04/09/rollout-2026-04-09T14-18-52-019d7265-45e6-7173-9e8f-80a2965e1891.jsonl
sessions/2026/04/14/rollout-2026-04-14T09-42-11-019d8b27-c005-7580-a454-bd7aa1960533.jsonl
sessions/2026/04/14/rollout-2026-04-14T14-47-42-019d8c3f-7437-7712-a4b0-e7701f45aee6.jsonl
log/codex-tui.log
sessions/2026/04/03/rollout-2026-04-03T14-18-19-019d537e-9b48-7b61-8845-3454f1d53a3e.jsonl
sessions/2026/04/08/rollout-2026-04-08T16-19-31-019d6dad-5def-70a3-9d8b-950b7309f335.jsonl
sessions/2026/04/10/rollout-2026-04-10T09-32-18-019d7685-42fd-7cc1-97a3-9879fbd3a9f7.jsonl
sessions/2026/03/31/rollout-2026-03-31T14-42-40-019d4421-d2b2-7ba3-b567-fe9bb1e63ba1.jsonl
sessions/2026/04/10/rollout-2026-04-10T09-00-06-019d7667-c908-7323-ab9d-7c8f0aab8eef.jsonl
sessions/2026/04/02/rollout-2026-04-02T14-41-17-019d4e6d-4761-7f40-9054-1dfa8fc81651.jsonl