rg is blocked by macOS

What version of Codex CLI is running?

0.139.0

What subscription do you have?

Pro

Which model were you using?

gpt-5.5

What platform is your computer?

macOS

What terminal emulator and version are you using (if applicable)?

iTerm

Codex doctor report

<details>
<summary>
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</summary>

{
  "schemaVersion": 1,
  "generatedAt": "1781438268s since unix epoch",
  "overallStatus": "warning",
  "codexVersion": "0.139.0",
  "checks": {
    "app_server.status": {
      "id": "app_server.status",
      "category": "app-server",
      "status": "ok",
      "summary": "background server is not running",
      "details": {
        "control socket": "/Users/atacan/.codex/app-server-control/app-server-control.sock",
        "daemon state dir": "/Users/atacan/.codex/app-server-daemon",
        "mode": "ephemeral",
        "pid file": "/Users/atacan/.codex/app-server-daemon/app-server.pid (missing)",
        "settings": "/Users/atacan/.codex/app-server-daemon/settings.json (missing)",
        "status": "not running",
        "update-loop pid file": "/Users/atacan/.codex/app-server-daemon/app-server-updater.pid (missing)"
      },
      "remediation": null,
      "durationMs": 0
    },
    "auth.credentials": {
      "id": "auth.credentials",
      "category": "auth",
      "status": "ok",
      "summary": "auth is configured",
      "details": {
        "auth file": "/Users/atacan/.codex/auth.json",
        "auth storage mode": "File",
        "stored API key": "false",
        "stored ChatGPT tokens": "true",
        "stored agent identity": "false",
        "stored auth mode": "chatgpt"
      },
      "remediation": null,
      "durationMs": 0
    },
    "config.load": {
      "id": "config.load",
      "category": "config",
      "status": "ok",
      "summary": "config loaded",
      "details": {
        "CODEX_HOME": "/Users/atacan/.codex",
        "config.toml": "/Users/atacan/.codex/config.toml",
        "config.toml parse": "ok",
        "cwd": "/Users/atacan/Developer/Repositories/Speechall-Repositories/speech-router-hb",
        "enabled feature flags": "shell_tool, unified_exec, shell_snapshot, terminal_resize_reflow, sqlite, hooks, enable_request_compression, multi_agent, tool_suggest, plugins, in_app_browser, browser_use, browser_use_external, computer_use, plugin_sharing, image_generation, skill_mcp_dependency_install, steer, guardian_approval, goals, collaboration_modes, tool_call_mcp_elicitation, personality, fast_mode, tui_app_server, workspace_dependencies",
        "feature flag overrides": "apps=false",
        "feature flags enabled": "26",
        "log dir": "/Users/atacan/.codex/log",
        "mcp servers": "1",
        "model": "gpt-5.5",
        "model provider": "openai",
        "sqlite home": "/Users/atacan/.codex"
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      "remediation": null,
      "durationMs": 0
    },
    "git.environment": {
      "id": "git.environment",
      "category": "git",
      "status": "ok",
      "summary": "git version 2.50.1 (Apple Git-155)",
      "details": {
        ".git entry": "directory",
        "PATH git #1": "/usr/bin/git",
        "PATH git entries": "1",
        "git branch": "main",
        "git build options": "git version 2.50.1 (Apple Git-155); cpu: arm64; no commit associated with this build; sizeof-long: 8; sizeof-size_t: 8; shell-path: /bin/sh; feature: fsmonitor--daemon; libcurl: 8.7.1; zlib: 1.2.12; SHA-1: SHA1_DC; SHA-256: SHA256_BLK",
        "git exec path": "/Applications/Xcode-26.5.0.app/Contents/Developer/usr/libexec/git-core",
        "git version": "git version 2.50.1 (Apple Git-155)",
        "repo detected": "true",
        "repo root": "/Users/atacan/Developer/Repositories/Speechall-Repositories/speech-router-hb",
        "selected git": "/usr/bin/git"
      },
      "remediation": null,
      "durationMs": 10
    },
    "installation": {
      "id": "installation",
      "category": "install",
      "status": "ok",
      "summary": "installation looks consistent",
      "details": {
        "PATH codex #1": "/opt/homebrew/bin/codex",
        "current executable": "/opt/homebrew/bin/codex",
        "install context": "brew (package /opt/homebrew/Caskroom/codex/0.139.0, bin /opt/homebrew/Caskroom/codex/0.139.0/bin, resources /opt/homebrew/Caskroom/codex/0.139.0/codex-resources, path /opt/homebrew/Caskroom/codex/0.139.0/codex-path)",
        "managed by bun": "false",
        "managed by npm": "false",
        "managed package root": "not set"
      },
      "remediation": null,
      "durationMs": 1
    },
    "mcp.config": {
      "id": "mcp.config",
      "category": "mcp",
      "status": "ok",
      "summary": "MCP configuration is locally consistent",
      "details": {
        "configured servers": "1",
        "disabled servers": "0",
        "stdio servers": "1"
      },
      "remediation": null,
      "durationMs": 0
    },
    "network.env": {
      "id": "network.env",
      "category": "network",
      "status": "ok",
      "summary": "network-related environment looks readable",
      "details": {
        "proxy env vars": "none"
      },
      "remediation": null,
      "durationMs": 0
    },
    "network.provider_reachability": {
      "id": "network.provider_reachability",
      "category": "reachability",
      "status": "ok",
      "summary": "active provider endpoints are reachable over HTTP",
      "details": {
        "ChatGPT base URL": "https://chatgpt.com/backend-api/ reachable (HTTP 403)",
        "reachability mode": "ChatGPT auth"
      },
      "remediation": null,
      "durationMs": 157
    },
    "network.websocket_reachability": {
      "id": "network.websocket_reachability",
      "category": "websocket",
      "status": "ok",
      "summary": "Responses WebSocket handshake succeeded",
      "details": {
        "DNS": "2 IPv4, 2 IPv6, first IPv4",
        "auth mode": "chatgpt",
        "connect timeout": "15000 ms",
        "endpoint": "wss://chatgpt.com/backend-api/<redacted>",
        "handshake result": "HTTP 101 Switching Protocols",
        "model provider": "openai",
        "models etag present": "true",
        "provider name": "OpenAI",
        "proxy env vars": "none",
        "reasoning header": "false",
        "server model present": "false",
        "supports websockets": "true",
        "wire API": "responses"
      },
      "remediation": null,
      "durationMs": 694
    },
    "runtime.provenance": {
      "id": "runtime.provenance",
      "category": "runtime",
      "status": "ok",
      "summary": "running brew on macos-aarch64",
      "details": {
        "commit": "unknown",
        "current executable": "/opt/homebrew/bin/codex",
        "install method": "brew (package /opt/homebrew/Caskroom/codex/0.139.0, bin /opt/homebrew/Caskroom/codex/0.139.0/bin, resources /opt/homebrew/Caskroom/codex/0.139.0/codex-resources, path /opt/homebrew/Caskroom/codex/0.139.0/codex-path)",
        "platform": "macos-aarch64",
        "version": "0.139.0"
      },
      "remediation": null,
      "durationMs": 0
    },
    "runtime.search": {
      "id": "runtime.search",
      "category": "search",
      "status": "ok",
      "summary": "search is OK (bundled)",
      "details": {
        "search command": "/opt/homebrew/Caskroom/codex/0.139.0/codex-path/rg",
        "search command readiness": "file exists",
        "search provider": "bundled"
      },
      "remediation": null,
      "durationMs": 0
    },
    "sandbox.helpers": {
      "id": "sandbox.helpers",
      "category": "sandbox",
      "status": "ok",
      "summary": "sandbox configuration is readable",
      "details": {
        "approval policy": "Never",
        "codex-linux-sandbox helper": "none",
        "execve wrapper helper": "/Users/atacan/.codex/tmp/arg0/codex-arg0D9WDD4/codex-execve-wrapper",
        "filesystem sandbox": "unrestricted",
        "network sandbox": "enabled"
      },
      "remediation": null,
      "durationMs": 0
    },
    "state.paths": {
      "id": "state.paths",
      "category": "state",
      "status": "ok",
      "summary": "state paths and databases are inspectable",
      "details": {
        "CODEX_HOME": "/Users/atacan/.codex (dir)",
        "active rollout files": "618 files, 754308534 total bytes, 1220563 average bytes",
        "archived rollout files": "52 files, 19863711 total bytes, 381994 average bytes",
        "goals DB": "/Users/atacan/.codex/goals_1.sqlite (file)",
        "goals DB integrity": "ok",
        "log DB": "/Users/atacan/.codex/logs_2.sqlite (file)",
        "log DB integrity": "ok",
        "log dir": "/Users/atacan/.codex/log (dir)",
        "memories DB": "/Users/atacan/.codex/memories_1.sqlite (file)",
        "memories DB integrity": "ok",
        "sqlite home": "/Users/atacan/.codex (dir)",
        "state DB": "/Users/atacan/.codex/state_5.sqlite (file)",
        "state DB integrity": "ok"
      },
      "remediation": null,
      "durationMs": 127
    },
    "state.rollout_db_parity": {
      "id": "state.rollout_db_parity",
      "category": "threads",
      "status": "warning",
      "summary": "rollout files and state DB thread inventory differ",
      "details": {
        "default model provider": "openai",
        "rollout DB active files": "612",
        "rollout DB active rows": "596",
        "rollout DB archive mismatches": "0",
        "rollout DB archived files": "52",
        "rollout DB archived rows": "51",
        "rollout DB duplicate DB paths": "0",
        "rollout DB duplicate rollout thread ids": "0",
        "rollout DB malformed file names": "0",
        "rollout DB missing active rows": "16",
        "rollout DB missing active sample": [
          "/Users/atacan/.codex/sessions/2026/06/13/rollout-2026-06-13T16-52-49-019ec178-a593-7c82-829e-77c35485bf3d.jsonl",
          "/Users/atacan/.codex/sessions/2026/06/13/rollout-2026-06-13T16-13-09-019ec154-545f-7db3-acde-20c780a6b48c.jsonl",
          "/Users/atacan/.codex/sessions/2026/06/13/rollout-2026-06-13T14-54-48-019ec10c-97dc-7983-8ba8-2acc58ab1cd1.jsonl",
          "/Users/atacan/.codex/sessions/2026/06/13/rollout-2026-06-13T14-39-16-019ec0fe-607b-7cf0-8b49-a9ff52b4d9d5.jsonl",
          "/Users/atacan/.codex/sessions/2026/06/13/rollout-2026-06-13T14-42-18-019ec101-256b-7583-87f4-81af99d58a6b.jsonl"
        ],
        "rollout DB missing archived rows": "1",
        "rollout DB missing archived sample": "/Users/atacan/.codex/archived_sessions/rollout-2026-06-13T13-13-47-019ec0b0-1a08-7683-89f9-1b8d377b8db9.jsonl",
        "rollout DB model providers": "openai=647",
        "rollout DB rows": "647",
        "rollout DB scan cap reached": "false",
        "rollout DB scan error sample": [
          "/Users/atacan/.codex/sessions/2025/09/06/rollout-2025-09-06T10-09-39-39472550-9b3a-4266-892a-f421ea2627f2.jsonl (no parseable rollout items)",
          "/Users/atacan/.codex/sessions/2025/09/06/rollout-2025-09-06T10-08-51-87ecac90-f99a-446e-98d2-fea4b17f64ee.jsonl (no parseable rollout items)",
          "/Users/atacan/.codex/sessions/2025/09/20/rollout-2025-09-20T10-57-43-cfb92fe8-ce69-4891-8c2c-fbc78859688a.jsonl (no parseable rollout items)",
          "/Users/atacan/.codex/sessions/2025/09/20/rollout-2025-09-20T10-58-01-9d478252-8a75-4f17-bf53-b01d128adda6.jsonl (no parseable rollout items)",
          "/Users/atacan/.codex/sessions/2025/10/03/rollout-2025-10-03T18-00-46-0dea519c-efe7-4560-9fa4-dad1a627cbc4.jsonl (no parseable rollout items)"
        ],
        "rollout DB scan errors": "6",
        "rollout DB sources": "vscode=534, cli=58, subagent:thread_spawn=31, subagent:other=21, exec=3",
        "rollout DB stale rows": "0"
      },
      "issues": [
        {
          "severity": "warning",
          "cause": "rollout files are missing from the state DB",
          "measured": "16 active, 1 archived",
          "expected": "every rollout file has a matching threads row",
          "remedy": null,
          "fields": []
        },
        {
          "severity": "warning",
          "cause": "rollout scan was incomplete or found bad files",
          "measured": "6 scan errors, 0 malformed names, scan cap reached: false",
          "expected": "rollout directories are fully scannable",
          "remedy": "Check file permissions and unexpected files under CODEX_HOME sessions.",
          "fields": []
        }
      ],
      "remediation": null,
      "durationMs": 1867
    },
    "system.environment": {
      "id": "system.environment",
      "category": "system",
      "status": "ok",
      "summary": "OS language en-US",
      "details": {
        "EDITOR": "not set",
        "LANG": "en_US.UTF-8",
        "VISUAL": "not set",
        "os": "Mac OS 26.5.1 [64-bit]",
        "os language": "en-US",
        "os type": "Mac OS",
        "os version": "26.5.1"
      },
      "remediation": null,
      "durationMs": 1
    },
    "terminal.env": {
      "id": "terminal.env",
      "category": "terminal",
      "status": "ok",
      "summary": "terminal metadata was detected",
      "details": {
        "COLORFGBG": "15;0",
        "COLORTERM": "truecolor",
        "TERMINFO_DIRS entry": [
          "/Applications/iTerm.app/Contents/Resources/terminfo (dir)",
          "/usr/share/terminfo (dir)"
        ],
        "TERM_PROGRAM": "iTerm.app",
        "color output": "disabled (stdout is not a terminal)",
        "effective locale": "en_US.UTF-8",
        "stderr is terminal": "true",
        "stdin is terminal": "true",
        "stdout is terminal": "false",
        "terminal": "iTerm2",
        "terminal size": "120x43",
        "terminal version": "3.6.11"
      },
      "remediation": null,
      "durationMs": 0
    },
    "terminal.title": {
      "id": "terminal.title",
      "category": "title",
      "status": "ok",
      "summary": "terminal title default",
      "details": {
        "terminal title activity": "true",
        "terminal title items": "activity, project-name",
        "terminal title project source": "git repo root",
        "terminal title project value": "speech-router-hb",
        "terminal title source": "default"
      },
      "remediation": null,
      "durationMs": 0
    },
    "updates.status": {
      "id": "updates.status",
      "category": "updates",
      "status": "ok",
      "summary": "update configuration is locally consistent",
      "details": {
        "cached latest version": "0.139.0",
        "check for update on startup": "true",
        "last checked at": "2026-06-14T11:52:01.663815Z",
        "latest version": "0.139.0",
        "latest version status": "current version is not older",
        "update action": "brew upgrade --cask codex",
        "version cache": "/Users/atacan/.codex/version.json"
      },
      "remediation": null,
      "durationMs": 198
    }
  }
}

</details>

What issue are you seeing?

When codex searches the repo, MacOS pops an alert window with the following content

<img width="520" height="536" alt="Image" src="https://github.com/user-attachments/assets/aad6da13-f64c-4968-840b-22c2a0833150" />

“rg” Not Opened Apple could not verify “rg” is free of malware that may harm your Mac or compromise your privacy. Move to Trash / Done

What steps can reproduce the bug?

prompt "can you search for the term @Dependency and see how many files have it"

CLI shows

• Exploring
  └ Search @Dependency

macOS pops the alert

What is the expected behavior?

_No response_

Additional information

_No response_