Windows Defender repeatedly prompts to submit .codex\config.toml; one prompt showed the same path twice

Open 💬 5 comments Opened Jun 30, 2026 by MercYuriy

Summary

Microsoft Defender on Windows has repeatedly shown Sample submission prompts involving Codex's local config.toml across separate events and machines.

A later screenshot captured on June 29, 2026 on laptop YURIYS_GAMINGPC directly showed Defender listing the same exact path twice in one prompt window:

  • C:\Users\shimk\.codex\config.toml
  • C:\Users\shimk\.codex\config.toml

This suggests either:

  • Codex is causing Defender to repeatedly see/re-evaluate this file during normal startup/update/plugin activity
  • Defender is overreacting to a normal Codex config file
  • or there is a duplicate-entry / duplicate-handle edge case in how the file is being surfaced

What is confirmed

  • Defender repeatedly prompted for Codex's local .codex\config.toml across separate events.
  • The pattern occurred on both desktop and laptop.
  • On the laptop, a preserved screenshot from 2026-06-29 directly showed a Defender Sample submission dialog for C:\Users\shimk\.codex\config.toml, with the same path shown twice in the same prompt window.
  • Earlier laptop investigation showed C:\Users\shimk\.codex\config.toml was newly created at 2026-06-03 03:10:50 America/Los_Angeles.
  • In that same minute, Codex logs showed plugin/install, bundled marketplace writes, and Chrome host reconciliation.
  • A nearby file, C:\Users\shimk\.codex\chrome-native-hosts-v2.json, was also created immediately afterward.
  • Defender on the laptop had SubmitSamplesConsent = 1, so prompting before upload is expected when Defender wants to submit a file sample.

What is not confirmed

  • I have not confirmed that every prompt involved the exact same unchanged file hash.
  • I have not found a Defender operational-log entry explicitly naming config.toml.
  • I have not proven whether the duplicate rows in the June 29 prompt were byte-identical copies, separate handles, or a Defender/UI duplication artifact.

Why this seems relevant to Codex

The timing on the laptop strongly suggests the file is being created or rewritten during normal Codex local-state/setup/update/plugin activity, not just sitting unchanged:

  • config.toml created: 2026-06-03 03:10:50 local time
  • config.toml written: 03:11:13
  • chrome-native-hosts-v2.json created: 03:11:14
  • Codex logs in the same minute showed plugin install + bundled marketplace writes + Chrome host reconciliation

That makes it plausible that Codex is regenerating or rewriting local config state in a way that repeatedly surfaces config.toml to Defender.

User impact

  • Repeated Windows Defender prompts during normal Codex use
  • User uncertainty about whether Codex local state is unsafe
  • One prompt showed the same exact path twice, which makes the behavior look buggy rather than merely cautious

Request

Could you investigate whether recent Windows/Desktop Codex behavior is rewriting or recreating .codex\config.toml (or surfacing it multiple times) in a way that triggers repeated Defender sample-submission prompts?

If useful, I can follow up with:

  • the exact screenshot text from the June 29 Defender prompt
  • the SHA-256 observed for the June 3 laptop config.toml
  • the local investigation summary correlating the file timestamps with Codex log activity

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