False positive security triggers hiding codex responses in concurrent data structure research code
What version of Codex CLI is running?
0.144.0
What subscription do you have?
Pro x20
Which model were you using?
gpt-5.6-sol [max]
What platform is your computer?
Microsoft Windows NT 10.0.19045.0 x64
What terminal emulator and version are you using (if applicable)?
Windows terminal -> ubuntu wsl -> tmux -> codex
Codex doctor report
{
"schemaVersion": 1,
"generatedAt": "1784238984s since unix epoch",
"overallStatus": "warning",
"codexVersion": "0.144.0",
"checks": {
"app_server.status": {
"id": "app_server.status",
"category": "app-server",
"status": "ok",
"summary": "background server is not running",
"details": {
"control socket": "/home/agent/.codex/app-server-control/app-server-control.sock",
"daemon state dir": "/home/agent/.codex/app-server-daemon",
"mode": "ephemeral",
"pid file": "/home/agent/.codex/app-server-daemon/app-server.pid (missing)",
"settings": "/home/agent/.codex/app-server-daemon/settings.json (missing)",
"status": "not running",
"update-loop pid file": "/home/agent/.codex/app-server-daemon/app-server-updater.pid (missing)"
},
"remediation": null,
"durationMs": 0
},
"auth.credentials": {
"id": "auth.credentials",
"category": "auth",
"status": "ok",
"summary": "auth is configured",
"details": {
"auth file": "/home/agent/.codex/auth.json",
"auth storage mode": "File",
"stored API key": "false",
"stored ChatGPT tokens": "true",
"stored agent identity": "false",
"stored auth mode": "chatgpt"
},
"remediation": null,
"durationMs": 0
},
"config.load": {
"id": "config.load",
"category": "config",
"status": "ok",
"summary": "config loaded",
"details": {
"CODEX_HOME": "/home/agent/.codex",
"config.toml": "/home/agent/.codex/config.toml",
"config.toml parse": "ok",
"cwd": "/home/trbot/agents/tmdb-collab-runtime/holi",
"enabled feature flags": "shell_tool, unified_exec, shell_snapshot, code_mode_host, terminal_resize_reflow, sqlite, memories, hooks, enable_request_compression, multi_agent, apps, tool_search_always_defer_mcp_tools, tool_suggest, plugins, in_app_browser, browser_use, browser_use_full_cdp_access, browser_use_external, computer_use, remote_plugin, plugin_sharing, image_generation, resize_all_images, skill_mcp_dependency_install, mentions_v2, steer, guardian_approval, goals, collaboration_modes, tool_call_mcp_elicitation, auth_elicitation, personality, fast_mode, tui_app_server, remote_compaction_v2, workspace_dependencies",
"feature flag overrides": "memories=true",
"feature flags enabled": "36",
"log dir": "/home/agent/.codex/log",
"mcp servers": "2",
"model": "gpt-5.6-sol",
"model provider": "openai",
"sqlite home": "/home/agent/.codex"
},
"remediation": null,
"durationMs": 0
},
"git.environment": {
"id": "git.environment",
"category": "git",
"status": "ok",
"summary": "git version 2.43.0",
"details": {
"PATH git #1": "/usr/bin/git",
"PATH git #2": "/bin/git",
"PATH git entries": "2",
"git build options": "git version 2.43.0; cpu: x86_64; no commit associated with this build; sizeof-long: 8; sizeof-size_t: 8; shell-path: /bin/sh",
"git exec path": "/usr/lib/git-core",
"git version": "git version 2.43.0",
"repo detected": "false",
"selected git": "/usr/bin/git"
},
"remediation": null,
"durationMs": 65
},
"installation": {
"id": "installation",
"category": "install",
"status": "ok",
"summary": "installation looks consistent",
"details": {
"PATH codex #1": "/home/agent/.local/bin/codex",
"PATH codex #2": "/home/agent/.local/bin/codex",
"PATH codex #3": "/usr/local/bin/codex",
"PATH codex entries": "3",
"current executable": "/home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/bin/codex",
"install context": "npm (package /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl, bin /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/bin, resources /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/codex-resources, path /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/codex-path)",
"managed by bun": "false",
"managed by npm": "true",
"managed by pnpm": "false",
"managed package root": "/home/agent/.local/lib/node_modules/@openai/codex",
"npm update target": "/home/agent/.local/lib/node_modules/@openai/codex"
},
"remediation": null,
"durationMs": 445
},
"mcp.config": {
"id": "mcp.config",
"category": "mcp",
"status": "ok",
"summary": "MCP configuration is locally consistent",
"details": {
"configured servers": "2",
"disabled servers": "0",
"stdio servers": "2"
},
"remediation": null,
"durationMs": 0
},
"network.env": {
"id": "network.env",
"category": "network",
"status": "ok",
"summary": "network-related environment looks readable",
"details": {
"proxy env vars": "none"
},
"remediation": null,
"durationMs": 0
},
"network.provider_reachability": {
"id": "network.provider_reachability",
"category": "reachability",
"status": "ok",
"summary": "active provider endpoints are reachable over HTTP",
"details": {
"ChatGPT base URL": "https://chatgpt.com/backend-api/ reachable (HTTP 404)",
"reachability mode": "ChatGPT auth"
},
"remediation": null,
"durationMs": 168
},
"network.websocket_reachability": {
"id": "network.websocket_reachability",
"category": "websocket",
"status": "ok",
"summary": "Responses WebSocket handshake succeeded",
"details": {
"DNS": "2 IPv4, 0 IPv6, first IPv4",
"auth mode": "chatgpt",
"connect timeout": "15000 ms",
"endpoint": "wss://chatgpt.com/backend-api/<redacted>",
"handshake result": "HTTP 101 Switching Protocols",
"model provider": "openai",
"models etag present": "true",
"provider name": "OpenAI",
"proxy env vars": "none",
"reasoning header": "false",
"server model present": "false",
"supports websockets": "true",
"wire API": "responses"
},
"remediation": null,
"durationMs": 695
},
"runtime.provenance": {
"id": "runtime.provenance",
"category": "runtime",
"status": "ok",
"summary": "running npm on linux-x86_64",
"details": {
"commit": "unknown",
"current executable": "/home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/bin/codex",
"install method": "npm (package /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl, bin /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/bin, resources /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/codex-resources, path /home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/codex-path)",
"platform": "linux-x86_64",
"version": "0.144.0"
},
"remediation": null,
"durationMs": 0
},
"runtime.search": {
"id": "runtime.search",
"category": "search",
"status": "ok",
"summary": "search is OK (bundled)",
"details": {
"search command": "/home/agent/.local/lib/node_modules/@openai/codex/node_modules/@openai/codex-linux-x64/vendor/x86_64-unknown-linux-musl/codex-path/rg",
"search command readiness": "file exists",
"search provider": "bundled"
},
"remediation": null,
"durationMs": 0
},
"sandbox.helpers": {
"id": "sandbox.helpers",
"category": "sandbox",
"status": "ok",
"summary": "sandbox configuration is readable",
"details": {
"approval policy": "Never",
"codex-linux-sandbox helper": "/home/agent/.codex/tmp/arg0/codex-arg0SSSZ7A/codex-linux-sandbox",
"execve wrapper helper": "/home/agent/.codex/tmp/arg0/codex-arg0SSSZ7A/codex-execve-wrapper",
"filesystem sandbox": "unrestricted",
"network sandbox": "enabled"
},
"remediation": null,
"durationMs": 0
},
"state.paths": {
"id": "state.paths",
"category": "state",
"status": "ok",
"summary": "state paths and databases are inspectable",
"details": {
"CODEX_HOME": "/home/agent/.codex (dir)",
"active rollout files": "63 files, 612328383 total bytes, 9719498 average bytes",
"archived rollout files": "0 files, 0 total bytes, 0 average bytes",
"goals DB": "/home/agent/.codex/goals_1.sqlite (file)",
"goals DB integrity": "ok",
"log DB": "/home/agent/.codex/logs_2.sqlite (file)",
"log DB integrity": "ok",
"log dir": "/home/agent/.codex/log (dir)",
"memories DB": "/home/agent/.codex/memories_1.sqlite (file)",
"memories DB integrity": "ok",
"sqlite home": "/home/agent/.codex (dir)",
"state DB": "/home/agent/.codex/state_5.sqlite (file)",
"state DB integrity": "ok"
},
"remediation": null,
"durationMs": 608
},
"state.rollout_db_parity": {
"id": "state.rollout_db_parity",
"category": "threads",
"status": "warning",
"summary": "rollout files and state DB thread inventory differ",
"details": {
"default model provider": "openai",
"rollout DB active files": "63",
"rollout DB active rows": "15",
"rollout DB archive mismatches": "0",
"rollout DB archived files": "0",
"rollout DB archived rows": "0",
"rollout DB duplicate DB paths": "0",
"rollout DB duplicate rollout thread ids": "0",
"rollout DB malformed file names": "0",
"rollout DB missing active rows": "48",
"rollout DB missing active sample": [
"/home/agent/.codex/sessions/2026/04/17/rollout-2026-04-17T02-46-07-019d9954-d647-7f51-8271-7500b1299fde.jsonl",
"/home/agent/.codex/sessions/2026/04/17/rollout-2026-04-17T03-05-40-019d9966-be69-7f31-8c12-4fc81109e4d2.jsonl",
"/home/agent/.codex/sessions/2026/04/17/rollout-2026-04-17T18-36-14-019d9cba-b183-7552-b930-1cde7a343482.jsonl",
"/home/agent/.codex/sessions/2026/04/17/rollout-2026-04-17T17-30-35-019d9c7e-9524-77c0-ba63-0318fb0adca7.jsonl",
"/home/agent/.codex/sessions/2026/04/22/rollout-2026-04-22T01-18-02-019db2c3-fdb7-7b70-8448-1238a4a83842.jsonl"
],
"rollout DB missing archived rows": "0",
"rollout DB model providers": "openai=15",
"rollout DB rows": "15",
"rollout DB scan cap reached": "false",
"rollout DB scan errors": "0",
"rollout DB sources": "cli=11, vscode=4",
"rollout DB stale rows": "0"
},
"issues": [
{
"severity": "warning",
"cause": "rollout files are missing from the state DB",
"measured": "48 active, 0 archived",
"expected": "every rollout file has a matching threads row",
"remedy": null,
"fields": []
}
],
"remediation": null,
"durationMs": 7647
},
"system.environment": {
"id": "system.environment",
"category": "system",
"status": "ok",
"summary": "OS language unavailable",
"details": {
"EDITOR": "not set",
"VISUAL": "not set",
"os": "Ubuntu 24.4.0 (noble) [64-bit]",
"os language": "unavailable",
"os type": "Ubuntu",
"os version": "24.4.0"
},
"remediation": null,
"durationMs": 5
},
"terminal.env": {
"id": "terminal.env",
"category": "terminal",
"status": "ok",
"summary": "terminal metadata was detected",
"details": {
"COLORTERM": "truecolor",
"TERM": "xterm-256color",
"color output": "enabled",
"multiplexer": "tmux",
"stderr is terminal": "true",
"stdin is terminal": "true",
"stdout is terminal": "true",
"terminal": "unknown",
"terminal size": "174x46",
"tmux allow-passthrough": "off",
"tmux client termname": "xterm-256color",
"tmux extended-keys": "off",
"tmux focus-events": "off",
"tmux set-clipboard": "external",
"tmux xterm-keys": "on"
},
"remediation": null,
"durationMs": 18
},
"terminal.title": {
"id": "terminal.title",
"category": "title",
"status": "ok",
"summary": "terminal title default",
"details": {
"terminal title activity": "true",
"terminal title items": "activity, project-name",
"terminal title project source": "cwd",
"terminal title project value": "holi",
"terminal title source": "default"
},
"remediation": null,
"durationMs": 0
},
"updates.status": {
"id": "updates.status",
"category": "updates",
"status": "ok",
"summary": "update configuration is locally consistent",
"details": {
"cached latest version": "0.144.5",
"check for update on startup": "true",
"dismissed version": "0.130.0",
"last checked at": "2026-07-16T20:27:18.011444286Z",
"latest version": "0.144.5",
"latest version status": "newer version is available",
"npm update target": "/home/agent/.local/lib/node_modules/@openai/codex",
"update action": "npm install -g @openai/codex",
"version cache": "/home/agent/.codex/version.json"
},
"remediation": null,
"durationMs": 504
}
}
}
What issue are you seeing?
I am getting false positive security errors that are hiding the responses. This is not even security work. I am a concurrency researcher, and I'm just trying to find bugs in a concurrent key-value map / database index as part of the peer review process. I'm having codex implement sanity checks, including what I call checksum validation. It's pretty straightforward code with no real security implication. Something I'd give to a good undergrad... I should have uploaded the entire logs in the thread below via /feedback.
Error I see:
<img width="1080" height="82" alt="Image" src="https://github.com/user-attachments/assets/f1ebbb74-366d-4ec3-9cc2-f3aebfee392e" />
What steps can reproduce the bug?
Uploaded thread: 019f6c9c-b3c8-7e41-a398-b38736e953d1
What is the expected behavior?
No security triggers.
Additional information
_No response_
This issue has 1 comment on GitHub. Read the full discussion on GitHub ↗